BIO 597 APPLIED AND ENVIRONMENTAL MICRO TENTATIVE SCHEDULE

DATE

LECTURE TOPIC

READING

 

Aug 29-31

Unit 1 - Foundations

What is "environmental" microbiology?

Bioenergetics

To see how we use what we know about microbial bioenergetics to solve real world problems, read through these links -->

(Review 4.6-4.14)

13.2-13.6, 14.3, 15.10-15.20

GroundWater Pollution Primer

Sept 5

Sept 7

Bioenergetics continued

No class – instead please attend my seminar "Beyond Monitoring – Study of Potentially Pathogenic E. coli in Central Michigan Water" 4pm Brooks 176.

 

Sept 12-14

Microbial Interactions in the Wild

Microbial mats

Terminology

16.1-16.2; 16.14

Sept 19

Sept 21

Nucleic Acid Based Methods of Analysis

Animation of PCR

Animation of gel electrophoresis

Unit 1 Test

 

Sept 26-28

Unit 2 - Microbial Environments

Terrestrial Environments

Movies of soil microbes - slow to load over a slow modem

Notes for Deep Subsurface

16.9

Nusslein and Tiedje, 1999, Soil Bacterial Community Shift Correlated with Change from Forest to Pasteur Vegetation in a Tropical Forest

Fry et al., 1997, Population Structure of Microbial Communities Associated with Two Deep, Anaerobic, Alkaline Aquifers

Terminology

Pics to go with Nusslein & Tiedje paper

Oct 3

Oct 5

Aeromicrobiology

Aquatic Environments

 

16.10-16.12

Oct 10

 

 

 

Oct 12

Aquatic Environments continued

 

 

 

Unit 2 Test

Sievert et al., 1999. Spatial heterogeneity of bacterial populations along an environmental gradient at a shallow submarine hydrothermal vent near Milos Island (Greece)Questions

Sat

Oct 14

Meeting - Southern Great Lakes Local Section of the Society for Industrial Microbiology - Abbott Laboratories, North Chicago, IL - Morning program on contamination of drinking water is particularly relevant.

 

Oct 17-19

Unit 3 - Detection & Control of Pathogens in the Environment

Environmentally Transmitted Pathogens

 

Sat

Oct 21

Meeting - "Pathogens in the Environment" - American Society for Microbiology Michigan Branch - Grand Valley State, Grand Rapids, MI.

 

Oct 24-26

Wastewater Treatment

11.15

Oct 31

Nov 2

Protection of Drinking Water - Guest speaker Mr. Toby West, ManTech Environmental, Aberdeen, MD (tentative)

Unit 3 Test

Background reading on txt of drinking water

Nov 7-9

Unit 4 - Impact of Microbial Activity on the Environment

Biogeochemical Cycles

 

16.13; 16.16-16.18

Nov 14

Nov 16

Impact of Biogeochemical Cycles Gone Haywire

Biodegradation/Bioremediation - Guest speaker Dr. John Davis, Dow Chemical Co., Midland, MI

Michigan Super Fund- Hazardous Waste Sites

Treatment of Acid-Mine Drainage

16.21-16.22

Terminology - please bring with you

Nov 21

Nov 23

Biodegradation/Bioremediation continued

No class - Thanksgiving

 

Nov 28

Nov 30

Exxon Valdez

Metal Pollution and First student presentation (Tonya Strong)

 ExxonValdez

16.20

Dec 5

Dec 7

Student Presentations (Dan Kiernan, Nikki Lampas, Kevin Bond, Matt Kern)

Student Presentations (Hyoungtae Kim, Nancy Clough, Kelly Schupbach, Jhonatan Sepulveda)

 

 Dec 14

FINAL EXAMS - Unit 4 + Comprehensive

 

 

Guest lecturers from other universities, government, or business may give lectures. Dates will be announced in advance.

Some reading assignments will be from journal articles